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Freely download GSP:
Current release: V1.06
Size: 120.24 KB
Compile GSP:
./make
./make install
Run GSP:
./bin/fqKgenoMH #Count the K-mer frequency
./bin/gncov_1.0 #predict the genome size base on the K-mer freq
Sample command line:
./bin/fqKgenoMH AE005174v2_fq.list 25 17
./bin/gncov_1.0 -t AE005174v2_fq.list.25mer.countMH -o AE005174v2_fq.list.25mer -k 25 -r 70
System requirements:
The following hardware and software is required to run GSP.
- An Intel Pentium processor or equivalent, 400 MHz or faster
- linux, UNIX, cygwin, windows
- Recomand 4 GB of available random-access memory (RAM)
Welcome to GSP HomePage
(An Efficient l-mer frequency genome size predictor)
Copyright @ 2009-2010 Zhejiang University. All Rights Reserved.
Copyright, 2009 - 2010, The Zhejiang University, China. All Rights reserved.
Permission granted to download and use GSP freely for academics. Any restrictions to use by non-academics are License need. Contact Zhejiang University Ph.D. Email: shangood@zju.edu.cn.